6 References

Davis, S., and P. S. Meltzer. 2007. “GEOquery: A Bridge Between the Gene Expression Omnibus (GEO) and BioConductor.” Bioinformatics 23 (14): 1846–47. https://doi.org/10.1093/bioinformatics/btm254.

Gönen, Mithat. 2009. “Statistical aspects of gene signatures and molecular targets.” Gastrointest Cancer Res 3 (2 Suppl): 19–21. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2684735{\&}tool=pmcentrez{\&}rendertype=abstract.

Huber, Wolfgang, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S Carvalho, Hector Corrada Bravo, et al. 2015. “Orchestrating High-Throughput Genomic Analysis with Bioconductor.” Nature Methods 12 (2): 115–21. https://doi.org/10.1038/nmeth.3252.

Lachmann, Alexander, Denis Torre, Alexandra B. Keenan, Kathleen M. Jagodnik, Hoyjin J. Lee, Lily Wang, Moshe C. Silverstein, and Avi Ma’ayan. 2018. “Massive Mining of Publicly Available RNA-Seq Data from Human and Mouse.” Nature Communications 9 (1). https://doi.org/10.1038/s41467-018-03751-6.

Lattin, Jane E, Kate Schroder, Andrew I Su, John R Walker, Jie Zhang, Tim Wiltshire, Kaoru Saijo, et al. 2008. “Expression Analysis of g Protein-Coupled Receptors in Mouse Macrophages.” Immunome Research 4 (1): 5. https://doi.org/10.1186/1745-7580-4-5.

Lonsdale, John, Jeffrey Thomas, Mike Salvatore, Rebecca Phillips, Edmund Lo, Saboor Shad, Richard Hasz, et al. 2013. “The Genotype-Tissue Expression (GTEx) project.” Nature Genetics 45 (6): 580–85. https://doi.org/10.1038/ng.2653.

Zhang, Jitao David, Klas Hatje, Gregor Sturm, Clemens Broger, Martin Ebeling, Martine Burtin, Fabiola Terzi, Silvia Ines Pomposiello, and Laura Badi. 2017. “Detect tissue heterogeneity in gene expression data with BioQC.” BMC Genomics 18 (1): 277. https://doi.org/10.1186/s12864-017-3661-2.

Zhu, Yuelin, Sean Davis, Robert Stephens, Paul S. Meltzer, and Yidong Chen. 2008. “GEOmetadb: Powerful alternative search engine for the Gene Expression Omnibus.” Bioinformatics 24 (23): 2798–2800. https://doi.org/10.1093/bioinformatics/btn520.